Table 1 Medical image dataset
From: Advantages of transformer and its application for medical image segmentation: a survey
Datasets | Year | Tasks | Resolving power(pixel) | Sample |
|---|---|---|---|---|
STARE [79] | 2000 | Retinal vascular segmentation | 700 \(\times\) 605 | 20 |
DRIVE [80] | 2004 | Retinal vascular segmentation | 768 \(\times\) 584 | 40 |
Alizarine [81] | 2010 | Corneal endothelial cell segmentation | 768 \(\times\) 576 | 30 |
CHASE-DBI [82] | 2012 | Retinal vascular segmentation | 999 \(\times\) 960 | 28 |
HRF [83] | 2013 | Retinal vascular segmentation | 3304 \(\times\) 2336 | 45 |
GLAS [72] | 2016 | Glandular segmentation | 567 \(\times\) 430 \(\sim\)775 \(\times\) 522 | 165 |
MoNuSeg [73] | 2017 | Nuclear segmentation of multiple organs | 1000 \(\times\) 1000 | 30 |
DSB18 [84] | 2018 | Nuclear segmentation | \(\sim\) | 670 |
TNBC [85] | 2018 | Nuclear segmentation | 512 \(\times\) 512 | 50 |
IDRiD [86] | 2018 | Segmentation of fundus lesions | 4288 \(\times\) 2848 | 516 |
DDR [87] | 2019 | Segmentation of fundus lesions | 512 \(\times\) 512 | 757 |
PanNuke [88] | 2019 | Multiple organ pan cancer cell segmentation | 256 \(\times\) 256 | 7904 |
Brain US [89] | 2019 | Ventricular septum segmentation | 512\(\times\) 512 | 1629 |
Kvasir-SEG [90] | 2020 | Gastrointestinal polyp segmentation | 332 \(\times\) 487\(\sim\)1920 \(\times\) 1072 | 1000 |
TM-EM3000 [91] | 2021 | Corneal endothelial cell segmentation | 266 \(\times\) 480 | 184 |
PROMISE12 [92] | 2012 | Prostate segmentation | \(\sim\) | 100 |
BTCV [37] | 2015 | Abdominal organ segmentation | 512 \(\times\) 512\(\times *\) | 50 |
BCV [41] | 2015 | Abdominal organ segmentation | \(\sim\) | 30 |
ACDC [93] | 2018 | Cardiac segmentation | \(\sim\) | 150 |
BraTS [94] | 2018 | Brain tumor segmentation | 240 \(\times\) 240 \(\times\) 155 | 285 |
MSD [38] | 2018 | Decathlon Division | \(\sim\) | 2633 |
LiTS [60] | 2019 | Liver tumor segmentation | 512 \(\times\) 512\(\times *\) | 131 |
KiTS19 [95] | 2019 | Renal tumor segmentation | \(\sim\) | 210 |
SegTHOR [43] | 2019 | Chest organ segmentation | \(\sim\) | 40 |
Thorax-85 [42] | 2021 | Chest organ segmentation | \(\sim\) | 85 |