Table 4 Best RGs in Arabidopsis thaliana according to Fig. 4 and ranked by CV
From: Automated identification of reference genes based on RNA-seq data
Arabidopsis | transcript_id | RPMM | CV (%) | Mean RPMM | Description | |
|---|---|---|---|---|---|---|
Col_0 | Kil_0 | |||||
Replicate 1 | AT1G67090.1 | 9476 | 9191 | 1.53 | 9333.5 | Ribulose bisphosphate carboxylase small chain 1A |
AT5G38410.1 | 7760 | 8135 | 2.36 | 7947.5 | Ribulose bisphosphate carboxylase (small chain) family protein | |
AT5G38430.1 | 7054 | 7548 | 3.38 | 7301 | Ribulose bisphosphate carboxylase (small chain) family protein | |
AT2G39730.1 | 4051 | 4343 | 3.48 | 4197 | Rubisco activase | |
AT5G38420.1 | 7329 | 7889 | 3.68 | 7609 | Ribulose bisphosphate carboxylase (small chain) family protein | |
Replicate 2 | AT2G39730.1 | 3906 | 4323 | 5.07 | 4114.5 | Rubisco activase |
AT1G67090.1 | 8523 | 9636 | 6.13 | 9079.5 | ribulose bisphosphate carboxylase small chain 1A | |
AT1G21310.1 | 7013 | 7976 | 6.42 | 7494.5 | Extensin 3 | |
AT5G38410.1 | 7047 | 8438 | 8.98 | 7742.5 | Ribulose bisphosphate carboxylase (small chain) family protein | |
Replicate 3 | AT5G38420.1 | 8708 | 8526 | 1.06 | 8617 | Ribulose bisphosphate carboxylase (small chain) family protein |
AT5G38430.1 | 8424 | 8169 | 1.54 | 8296.5 | Ribulose bisphosphate carboxylase (small chain) family protein | |
AT2G39730.1 | 4365 | 4524 | 1.79 | 4444.5 | Rubisco activase | |
AT5G38410.1 | 9172 | 8822 | 1.95 | 8997 | Ribulose bisphosphate carboxylase (small chain) family protein | |
AT1G67090.1 | 11,051 | 9694 | 6.54 | 10,372.5 | Ribulose bisphosphate carboxylase small chain 1A | |