Table 3 Best RGs in reproductive tissues (combination of pollen and pistil) of olive tree according to Fig. 2c and ranked by CV
From: Automated identification of reference genes based on RNA-seq data
Transcript_id | RPMM | CV (%) | Mean RPMM | Best hit | Description | |||||
|---|---|---|---|---|---|---|---|---|---|---|
PM | PG1 | PG5 | S2 | S3 | S4 | |||||
rp11_olive_006695 | 205 | 209 | 206 | 208 | 177 | 154 | 10.72 | 193.2 | Q39011 | Shaggy-related protein kinase eta Arabidopsis thaliana |
rp11_olive_000781 | 105 | 140 | 112 | 104 | 108 | 127 | 11.36 | 116 | Q94A41 | Alpha-amylase 3, chloroplastic Arabidopsis thaliana |
rp11_olive_006061 | 327 | 272 | 238 | 343 | 285 | 253 | 13.16 | 286.3 | Q8VZ80 | Polyol transporter 5 Arabidopsis thaliana |
rp11_olive_006091 | 283 | 221 | 211 | 208 | 177 | 190 | 15.65 | 215 | A0A022R151 | Uncharacterized protein Erythranthe guttata |
rp11_olive_010107 | 228 | 213 | 184 | 250 | 295 | 199 | 15.98 | 228.2 | O23254 | Serine hydroxymethyltransferase 4 Arabidopsis thaliana |
rp11_olive_005197_split_1 | 366 | 430 | 381 | 343 | 423 | 552 | 16.37 | 415.8 | Q42679 | S-adenosylmethionine decarboxylase proenzyme Catharanthus roseus |
rp11_olive_003279 | 122 | 179 | 153 | 114 | 118 | 145 | 16.64 | 138.5 | Q9LV37 | Mitogen-activated protein kinase 9 Arabidopsis thaliana |
rp11_olive_000623 | 94 | 94 | 58 | 104 | 108 | 100 | 17.68 | 93 | A0A068V6W8 | Coffea canephora DH200Â =Â 94 genomic scaffold, scaffold_132 Coffea canephora |
rp11_olive_007981 | 144 | 149 | 108 | 156 | 147 | 91 | 18.2 | 132.5 | Q93Y40 | Oxysterol-binding protein-related protein 3C Arabidopsis thaliana |
rp11_olive_005099 | 888 | 728 | 678 | 530 | 550 | 579 | 18.84 | 658.8 | P53492 | Actin-7 Arabidopsis thaliana |
rp11_olive_005815 | 311 | 272 | 256 | 322 | 364 | 444 | 19.03 | 328.2 | P17598 | Catalase isozyme 1 Gossypium hirsutum |
rp11_olive_000209_split_1 | 161 | 115 | 117 | 166 | 118 | 100 | 19.16 | 129.5 | Q67YI9-2 | 2 of Clathrin interactor EPSIN 2 Arabidopsis thaliana |
rp11_olive_001245 | 161 | 175 | 108 | 166 | 187 | 118 | 19.16 | 152.5 | A5A7I7 | Calcium-dependent protein kinase 4 Solanum tuberosum |
rp11_olive_008079 | 239 | 204 | 197 | 343 | 275 | 263 | 19.34 | 253.5 | M1AVD3 | Uncharacterized protein Solanum tuberosum |
rp11_olive_008883 | 128 | 119 | 144 | 187 | 108 | 118 | 19.51 | 134 | Q9LZI2 | UDP-glucuronic acid decarboxylase 2 Arabidopsis thaliana |
rp11_olive_035033 | 178 | 166 | 224 | 177 | 285 | 199 | 19.76 | 204.8 | P62201 | Calmodulin Lilium longiflorum |
rp11_olive_029725 | 211 | 128 | 184 | 177 | 157 | 118 | 19.82 | 162.5 | O04834 | GTP-binding protein SAR1A Arabidopsis thaliana |