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Improving cardiovascular risk prediction with machine learning: a focus on perivascular adipose tissue characteristics
BioMedical Engineering OnLine volume 23, Article number: 77 (2024)
Abstract
Background
Timely prevention of major adverse cardiovascular events (MACEs) is imperative for reducing cardiovascular diseases-related mortality. Perivascular adipose tissue (PVAT), the adipose tissue surrounding coronary arteries, has attracted increased amounts of attention. Developing a model for predicting the incidence of MACE utilizing machine learning (ML) integrating clinical and PVAT features may facilitate targeted preventive interventions and improve patient outcomes.
Methods
From January 2017 to December 2019, we analyzed a cohort of 1077 individuals who underwent coronary CT scanning at our facility. Clinical features were collected alongside imaging features, such as coronary artery calcium (CAC) scores and perivascular adipose tissue (PVAT) characteristics. Logistic regression (LR), Framingham Risk Score, and ML algorithms were employed for MACE prediction.
Results
We screened seven critical features to improve the practicability of the model. MACE patients tended to be older, smokers, and hypertensive. Imaging biomarkers such as CAC scores and PVAT characteristics differed significantly between patients with and without a 3-year MACE risk in a population that did not exhibit disparities in laboratory results. The ensemble model, which leverages multiple ML algorithms, demonstrated superior predictive performance compared with the other models. Finally, the ensemble model was used for risk stratification prediction to explore its clinical application value.
Conclusions
The developed ensemble model effectively predicted MACE incidence based on clinical and imaging features, highlighting the potential of ML algorithms in cardiovascular risk prediction and personalized medicine. Early identification of high-risk patients may facilitate targeted preventive interventions and improve patient outcomes.
Introduction
Cardiovascular diseases (CVDs), including myocardial infarction, acute coronary syndrome and stroke, are the primary contributors to mortality on a global scale. Early prevention and treatment of major adverse cardiovascular events (MACEs) are crucial for reducing the morbidity and mortality associated with CVDs [1]. Computed tomography angiography (CTA) has emerged as a noninvasive tool for screening major cardiovascular events, providing valuable insights into atherosclerosis and risk prediction [2].
Machine learning (ML), a branch of computer science, incorporates numerous variables using algorithms to identify their nonlinear relationships and complex interactions [3]. ML algorithms have been explored for their ability to predict heart failure [4], arrhythmia [5], postsurgical mortality [6], and composite CVD risk [7]. A prior investigation demonstrated that the ML exhibited superior performance compared to the logistic regression (LR), a traditional statistical technique, in forecasting patient outcomes [8]. The reason may stem from the inherent limitations of LR, which is known to be susceptible to multicollinearity. While some ML models, such as Linear Discriminant Analysis (LDA) and linear Support Vector Machine (SVM), are limited in capturing nonlinear relationships, others like Adaptive Boosting (AdaBoost) and ensemble methods are effective in modeling complex interactions among features. Additionally, multicollinearity, which poses challenges for traditional models like LR and LDA, is better managed by advanced ML models.
In the field of MACE prediction, the use of ML could improve CVD risk prediction by agnostically discovering new predictors of risk and learning about their complex interactions [9]. Previous studies have integrated myocardial perfusion imaging into the prediction of MACEs using ML techniques, demonstrating a moderate level of accuracy with area under the curve (AUC) values ranging from 0.73 to 0.79 [10, 11]. However, the clinical utilization of myocardial perfusion imaging remains limited. Recently, perivascular adipose tissue (PVAT), the adipose tissue surrounding the coronary artery, has attracted increased amounts of attention due to its hypothetical role in the pathogenesis of CVDs [12]. Using CTA images, PVAT characteristics can potentially be evaluated to determine if individuals are at increased risk of adverse cardiovascular outcomes [13, 14]. In addition, ensemble learning has been proposed because it is more effective and has a better generalization ability than single algorithms [15]. Coupling PVAT imaging features with the ML algorithm may hold promise for improving cardiovascular prevention by enhancing early detection capabilities [16]. However, the effectiveness of ensemble machine learning algorithms utilizing PVAT features in predicting patients at risk of MACEs remains uncertain.
Hence, we developed a novel ensemble model to predict MACE incidence utilizing ML algorithms. Through the utilization of stacking algorithms, our ensemble model incorporating both clinical and imaging features was established. The ability of the prediction model for MACE risk stratification may facilitate optimal preventive treatment intervention in future.
Methods
Participants and data collection
From January 2017 to December 2019, we analyzed a cohort of 1077 individuals who underwent coronary CT scanning at our facility. Exclusion criteria included the following: (1) coronary artery stenosis greater than 20% in at least one coronary major vessel; (2) history of stroke, serious heart disease or tumor; (3) incomplete clinical and imaging data; and (4) loss to follow-up. After exclusion, 228 subjects were included. Figure 1 illustrates the flowchart of the subject selection.
The baseline features of the subjects, including age and sex, were collected. Risk factors, including hypertension, smoking history, alcohol consumption, diabetes, body mass index (BMI) and laboratory findings. The BMI was obtained using the equation weight (kg) divided by squared height (m2). A TyG index was calculated by integrating fasting triglyceride (TG) by fasting blood glucose (FBG). The definition of hypertension was to have a systolic blood pressure (SBP) higher than 140 mmHg or a diastolic blood pressure (DPB) higher than 90 mmHg on two separate occasions or to be receiving antihypertensive medication. The definition of diabetes was to have an FBG ≥ 126 mg/dL or to be receiving any antidiabetic medication.
Follow-up and end points
Follow-ups through clinical visits were conducted for up to three years. The endpoint was the occurrence of MACEs [17], such as myocardial infarction, unstable angina, or stroke, which were confirmed through clinical presentation, imaging data, or other pertinent data collected during each follow-up session and diagnosed by specialized cardiology physicians or neurologists.
CTA multiparameter analysis
The CTA scan was performed on the Siemens SOMATOM Definition AS (Siemens Medical Systems, Erlangen, Germany). The acquired images were postprocessed by Deepwise Coronary Artery Analysis Software (Deepwise Inc., Beijing, China). The coronary artery calcium (CAC) scores were calculated based on a sequence within the CTA examination. Prior to the injection of the contrast agent, a sequence was scanned during diastole using prospective gated acquisition. This non-contrast sequence was used to extract the CAC scores, which were automatically calculated by the software and confirmed manually.
The segmentation of PVAT was performed by manual adjustment on the basis of automatic segmentation. Specifically, if non-adipose tissues surrounding the coronary artery were encompassed as the region of interest during the automatic segmentation procedure, the radiologist will remove these tissues manually to ensure that only PVAT was included.
For the analysis of PVAT, the region of interests (ROIs) were automatically tracked by the software based on the fat threshold (from − 190 to − 30 HU). The ROI extends from 10 to 40 mm proximal to the coronary artery, with the radial distance of the ROI equivalent to the diameter of the coronary artery. Two experienced radiologists confirmed the results of the segmentation. Then, the fat attenuation index (FAI) and fat volume (FV) of PCAT could be automatically generated by the software. CAC scores, PCAT-FAI, and PCAT-FV were recorded as coronary artery imaging features. PVAT is visualized with an adipose tissue Hounsfield unit color table.
Model development
Feature selection
The features screened for model development included both clinical features and coronary artery imaging features. First, samples with 80% or above of missing values were excluded, among which were 186 subjects with a high percentage of missing values and 24 subjects with missing critical images. Afterwards, the remaining missing values were imputed by multiple imputation. After normalizing the continuous variables using z score normalization, 23 features were considered for selection. The least absolute shrinkage and selection operator (LASSO) regression was employed for feature selection in order to automatically remove redundant and irrelevant collinear features. The correlation between the selected features was determined by Spearman's correlation coefficient. Finally, the most predictive features were confirmed for further model development.
ML algorithm
We employed five ML algorithms to predict MACEs in our study based on the selected features. In addition to four commonly used models, namely, AdaBoost, GNB, LDA, and SVM models [18], we introduced a stacking ensemble model. The ensemble model was built by stacking the classification probabilities of the outputs of the other four machine learning models. Compared with other ML models, this approach can enhance the prediction accuracy by combining diverse models, reducing the possibility of overfitting, and improving the model stability and generalizability [19]. Besides, the traditional LR model was also developed. Significant variables identified in the univariate analysis were incorporated into the multivariable LR analysis.
Model fitting
A fivefold cross-validation method was used to assign the training and validation cohorts using the same random seed across all splits to ensure consistency in groupings. Herein, based on the occurrence of MACEs within the first three years of initial examination, the MACE prediction task was conceptualized as a binary classification problem, with all machine learning models generating a normalized risk probability within the range of 0 to 1. The combination of hyperparameters that yielded the best average AUC was selected for model fitting.
Model evaluation
Model performance was evaluated using the receiver operating characteristic (ROC) curves. Calibration curves were employed for qualitative evaluation of model calibration, while decision curve analysis (DCA) was utilized to assess the utility of the models across various threshold probabilities. Confusion matrices were employed for comparative analysis of model performances. Furthermore, model efficiency metrics were computed to quantitatively assess the predictive capabilities of each model.
Additionally, in order to further validate the model's clinical applicability, model with the best performance was used to predict 3-year MACE incidence using Kaplan‒Meier survival curves. By applying the cut-off values determinate by the X-tile software [20], the subjects were divided into high, middle, and low ML risk groups. The overall log-rank test was applied to compare the differences between Kaplan–Meier survival curves. Figure 2 shows the study flowchart.
Statistical analysis
SPSS (version 26.0), R software (version 4.0.2), X-tile (version 3.6.1), and MedCalc (version 19.5.6) used to analyze the data. A comparison of variables between patients with and without MACE was carried out based on the results of the follow-up. A normal distribution was determined by the Kolmogorov–Smirnov test. A continuous variable is expressed as the mean + standard deviation in normal distributions and median in nonnormal distributions. A categorical variable is expressed as frequency counts and percentages. T test and a Chi-square test were used to analyze differences between groups. The AUCs of the different models were compared using DeLong tests. The significance of a study is determined by P values that have two tails no greater than 0.05. We set the P-value threshold at 0.05 because it is a widely accepted standard in many scientific fields and balances statistical rigor with the practical significance of our findings.
Results
Clinical features
Out of the initial dataset of 1077 patients, 210 patients were excluded due to a high missing values or missing critical images for the analysis. A bias analysis was conducted to examine the demographic characteristics of patients with complete data in comparison to those with missing data. The results indicated no significant differences between the two, suggesting that the missing data were likely random and did not introduce systematic biases (Supplementary materials, Table S1).
In our analysis, 228 participants were involved with an average age of (62.58 ± 11.63) years and 146 men (64.0%). Regarding factors associated with arteriosclerosis, 56.6% of patients had hypertension, 25.9% were current smokers, 27.2% currently consumed alcohol, and 28.9% had diabetes.
Patients who experienced MACEs were older (68.13 ± 10.23 vs. 60.26 ± 11.42 years, P < 0.001) compared to those who did not experience MACEs. Besides, there was a higher proportion of males (74.6% vs. 59.6%, P = 0.032) among patients who experienced MACEs compared to those who did not. Furthermore, individuals in the MACE group were more inclined to engage in unhealthy lifestyle behaviors (smoking and alcohol use, 35.8% vs. 21.7%, P = 0.027 and 38.8% vs. 22.4%, P = 0.011, respectively), and the prevalence of hypertension was notably higher in the MACE group compared to the non-MACE group (76.1% vs. 48.4%, P < 0.001). The clinical characteristics of the patients are outlined in Table 1, and are in line with known literature [17].
Coronary artery imaging features
As presented in Table 2, compared with patients without MACE, those with MACE outcomes had a much greater CAC score (78.76 [5.43–371.10] vs. 0 [0–47.38], P < 0.001). With regard to PVAT features, the median PVAT-FAI was greater in the MACE group compared to the non-MACE group (− 71.56 [− 76.87–66.51] vs. − 80.58 [− 87.34–75.05] HU for the RCA, − 65.25 [− 71.70–61.38] vs. − 71.94 [− 76.87–66.67] HU for the LCX, and − 67.68 [− 72.59–63.09] vs.  76.17 [− 81.37–71.31] HU for the LAD, respectively, all P < 0.001). In addition, the PVAT volume was smaller in the MACE group (2.13 [1.62–2.94] mm3 for the RCA, 1.27 [0.95–1.65] mm3 for the LCX, and 1.65 [1.32–2.34] mm3 for the LAD) than in the non-MACE group (2.84 [2.38–3.37] mm3 for the RCA, 1.59 [1.19–1.94] mm3 for the LCX, and 2.24 [1.86–2.82] mm3 for the LAD, all P < 0.001). Figure 3 shows the typical CTA images obtained during the analysis.
Development and performance of models
By using LASSO, irrelevant or redundant features were eliminated. Finally, seven features were chosen for ML model development, including 3 clinical features (age, hypertension status, and smoking status) and 4 coronary artery imaging features (CAC scores, PCAT-FAIRCA, PCAT-FAILAD, and PCAT-FVRCA). Feature importance was determined using LASSO regression (Supplementary materials, Figure S1). The reason to use LASSO for all the ML models was driven by the need for a model-agnostic feature selection process that could be consistently applied across different ML algorithms, ensuring a fair comparison. Correlations among the selected features were evaluated using Spearman’s correlation coefficients (Supplementary materials, Figure S2). Additionally, in LR analysis, variables that exhibited statistical significance in the univariate analysis were subsequently incorporated into the multivariate logistic regression analysis, which is a common approach to develop a classical LR model. Age, hypertension, CAC scores, PCAT-FAILAD, and PCAT-FAIRCA were independent risk factors for MACE prediction (Supplementary materials, Table S2).
As Adaboost inherently calculates feature importance during its training process, a supplementary analysis was conducted using AdaBoost for the feature selection. There was no significant difference of the AUCs between LASSO and AdaBoost selections (Supplementary materials, Table S3). Besides, a supplementary analysis using LASSO for the LR feature selection was also conducted. No significant difference of the AUCs was found between LASSO and univariate-multivariate analysis (Supplementary materials, Table S4).
We compared the performance of the ML models to classical LR and a well-established model, the Framingham Risk Score [21]. Table 3 summarizes commonly used metrics for the model evaluation. Upon evaluation of LR, Framingham Risk Score, AdaBoost, GNB, LDA, SVM, and an ensemble algorithm, it was determined that the ensemble algorithm exhibited superior predictive performance metrics. Specifically, the ensemble algorithm demonstrated an AUC of 0.94, accuracy of 0.87, precision of 0.74, recall of 0.87, F1-score of 0.80, sensitivity of 0.87, specificity of 0.88, PPV of 0.74, and NPV of 0.94 in the training cohort. In the validation cohort, the ensemble algorithm maintained strong performance with an AUC of 0.93, accuracy of 0.88, precision of 0.77, recall of 0.85, F1-score of 0.81, sensitivity of 0.85, specificity of 0.89, PPV of 0.77, and NPV of 0.94. (Fig. 4 and Figure S3). The model parameters and settings were provided in detail in Supplementary Appendix S1. The formulas of the ensemble model are available in Supplementary Appendix S2.
As an additional demonstration of the effectiveness of the models, the ROC curves are plotted in Fig. 5A. Although the AUC of the ensemble model did not exhibit the most substantial advantage in the training cohort when compared with all the other models, it demonstrated superior performance in the validation cohort (Table 4). The ensemble model's predicted probability was close to the actual probability according to calibration curves, which describe how well the prediction agrees with reality (Supplementary materials online, Figure S4). The clinical net benefit can be calculated using DCA to determine whether using a model is beneficial. In our study, the ensemble model demonstrated superior decision-making capabilities when compared to the other four algorithms, as illustrated in Fig. 5. Consequently, the ensemble algorithm was chosen for further model development.
Subsequently, the ensemble model was utilized for risk stratification prediction in order to investigate its potential clinical utility. Patients were categorized into low-risk, intermediate-risk, and high-risk cohorts for the prediction of MACE. Cut-off values of the three risk groups were 0.14 and 0.92. As presented in Fig. 6, the risk probability differed significantly among the three groups (P < 0.0001). The 3-year MACE risk for the middle-risk group was found to be 10.05 times (95% CI 8.46–23.33) higher compared to the low-risk group. Similarly, the 3 year MACE risk for the high-risk group was 51.21 times higher (95% CI 22.15–118.42) than that of the low-risk group. These findings suggest that the ensemble model could offer more valuable information and thus be more applicable in clinical settings.
Discussion
Our study developed an ensemble model based on clinical and imaging features to predict MACEs accurately. Older age, current smoker, and a higher incidence of hypertension were identified as significant risk factors for MACEs, consistent with previous research. Additionally, patients with MACEs exhibited significantly higher CAC scores and median PVAT values, suggesting these imaging biomarkers may play a role in risk stratification and prognosis assessment. As compared to the other algorithms, the ensemble model performed the best in terms of prediction accuracy.
Seven common features were utilized in constructing the predictive ML models in our study. The features can be classified into three categories: general information of patients (age); lifestyle habits (hypertension and smoking); and CTA imaging data (CAC scores, PCAT-FAIRCA, PCAT-FAILAD, and PCAT-FVRCA). For comparison, a LR model was limited to only five features using univariate and multivariate regression analysis. As presented in our study, the inclusion of additional features has the potential to enhance prediction accuracy by capturing more complex relationships and interactions within the data. Furthermore, the incorporation of more features may enhance the model's resilience to data fluctuations and enhance its applicability to novel datasets, thereby mitigating the risk of overfitting. Additionally, it was observed that the laboratory results were not incorporated into the models, potentially attributable to the early stage of the disease that leads to lack of significant variations in the laboratory findings. It highlights a strength of our ML-based approach to dimensionality reduction. By preserving features that remain unaffected by laboratory findings, our model demonstrates robustness and relevance, even at early stages of the disease when laboratory variations are minimal. The clinical features observed in our study align with established risk factors for cardiovascular events. Older age and smoker have long been recognized as significant contributors to cardiovascular morbidity and mortality [22, 23]. Moreover, the increase in the incidence of hypertension among patients with MACE highlights the continued importance of blood pressure management in mitigating cardiovascular risk [24]. Our findings reinforce the need for targeted interventions aimed at addressing modifiable risk factors like smoking and drinking alcohol, to reduce the burden of MACE in high-risk populations [25, 26].
Coronary artery imagines, particularrly CTA, can contribute significantly to risk stratification and prognosis. Our analysis revealed distinct patterns in CAC scores and PVAT characteristics between patients with and without a 3-year MACE risk in a population that did not exhibit disparities in laboratory results. The heightened CAC burden observed in the MACE group signifies advanced atherosclerotic processes and plaque vulnerability, consistent with previous studies linking CAC scores to adverse cardiovascular outcomes [27, 28]. Additionally, alterations in PVAT composition, as reflected in our findings, underscores PVAT’s emerging role as a marker of metabolic disorders and inflammation [29, 30]. It has been reported that an increased LAD and RCA PVAT attenuation is associated with an increased CVD risk [31]. In our research, we substantiated the additional predictive significance of PCAT-FAIRCA, PCAT-FAILAD, and PCAT-FVRCA in patients experiencing MACEs. The comparative analysis of our models with the Framingham Risk Score highlights the added value of incorporating CTA characteristics into cardiovascular risk prediction models. The attenuation of PVAT and alterations in intracellular lipid deposition are attributed to early and persistent inflammation [32]. Thus, PVAT features may provide important complementary information about coronary artery disease [33].
The development of a predictive model integrating clinical and imaging features represents a significant advancement in personalized risk assessment. Recently, ML algorithms have been used to develop regression and classification models for clinical prediction [34, 35]. In this study, we compare LR, a classical statistical method, with ML algorithms including ensemble methods (AdaBoost), probabilistic models (Gaussian Naive Bayes), and linear classifiers (LDA and SVM). ML algorithms, particularly those using ensemble techniques, are generally less affected by multicollinearity due to their ability to combine multiple models and their inherent design to handle high-dimensional data. While the traditional LR model proved to be effective in predicting MACEs, the utilization of ML model, specifically the ensemble model, showcases the potential of data-driven approaches in health care decision support systems. Clinical data are inherently diverse and often suffer from imbalances among classes or outcomes. Although the cross-validation in our study attempts to mitigate this issue by partitioning data into multiple folds, the results in each fold may still not adequately representing the full spectrum of clinical scenarios. That’s the reason why the four commonly used ML models seem to perform worse in the validation cohort in our study [36]. The ensemble model, on the other hand, could mitigate this issue by amalgamating multiple base models to enhance overall performance. In our study, multiple base classifiers were employed as level-0 models. The predictions of these base classifiers were then used as input features for a level-1 metamodel, which generated the final prediction. By aggregating predictions from multiple models, the ensemble model effectively smooths out noise and leads to consistent performance across both training and validation cohorts [37]. The model’s high accuracy, precision, and sensitivity underscore its potential clinical utility in guiding risk management strategies and optimizing patient outcomes [19, 38].
In our study, we utilized fivefold cross-validation to evaluate the efficacy and reliability of our predictive model. Cross-validation involves splitting the dataset into multiple subsets and using each fold as both training and validation data. In each iteration, the model was trained on four folds and validated on onefold. The scores from the five validation folds were averaged to obtain a single representative score, which was used for final model prediction. Afterwards, the performance metrics are derived from the final model. This approach enables more efficient utilization of the available data.
In light of MACEs’ high mortality risk, early detection of MACEs may facilitate risk stratification, clinical decisions, and improved patient outcomes. For instance, implementing stringent lifestyle management practices, such as controlling blood pressure and cessation of smoking, adhering to a nutritious and well-rounded diet, engaging in regular physical activity to decrease overall body fat, and utilizing appropriate medication therapies (such as GLP-1 agonists) that focus on lipid metabolism and diminish fat build-up, may be efficaciously employed in the prevention of MACEs in patients at high risk. GLP-1 agonists, traditionally used for glycemic control in type 2 diabetes, have shown significant cardiovascular benefits. Combining the pharmacological advancements with stringent lifestyle interventions may offer a synergistic approach to significantly mitigate the risk of MACEs in high-risk patients.
Our study exhibits certain limitations. First, since the individuals under study were exclusively sourced from a single medical facility, there exists a potential for bias in the evaluation of predictive efficacy. To reduce the likelihood of overfitting and providing robust estimates of predictive accuracy, we utilized cross-validation to evaluate the efficacy and reliability of our predictive model. Second, directly comparing the ensemble ML model to individual variables can be challenging due to its inherent complexity and nonlinear relationships. The ensemble model combines the predictions of multiple base ML models, which obfuscates the contribution of each individual variable to the overall model performance. Third, the performance/validation metrics for the automatic segmentation tool of PVAT were not calculated. However, in our study the automatic segmentation is based on well-established rules of PVAT segmentation [39]. Given that the segmentation is rule-based, there was no need to independently verify its accuracy. Besides, in our research process, there were no instances requiring manual adjustments, which further attests to its robustness and reliability. Finally, although the ensemble model demonstrated promising performance in risk stratification, the translation of the model’s predictions into meaningful clinical decisions and interventions needs to be further explored.
Conclusion
Our study established an ensemble model for the prediction of the occurrence of MACEs using clinical and PVAT features. By integrating clinical data, advanced imaging modalities such as CTA, and machine learning techniques, we advance towards a more nuanced understanding of cardiovascular risk prediction. These findings may improve patient outcomes through early disease prevention and therapeutic interventions.
Availability of data and materials
The datasets used during the current study are available from the corresponding author (CH) on reasonable request.
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This work was supported by Zhejiang Medical Health Science and Technology Program (2022KY1317).
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All authors were involved in writing the above article. CH was responsible for conceptualization, investigation and writing the original draft. FYW and LFF contributed to image interpretation and data collection. LTK, ZFL, and YPQ contributed to the collection of clinical cases. HWX contributed to critically revising the manuscript. The author(s) read and approved the final manuscript.
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He, C., Wu, F., Fu, L. et al. Improving cardiovascular risk prediction with machine learning: a focus on perivascular adipose tissue characteristics. BioMed Eng OnLine 23, 77 (2024). https://doi.org/10.1186/s12938-024-01273-5
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DOI: https://doi.org/10.1186/s12938-024-01273-5