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Fig. 4 | BioMedical Engineering OnLine

Fig. 4

From: A protocol for CABS-dock protein–peptide docking driven by side-chain contact information

Fig. 4

CABS-dock predictions for the 3bfq complex. The image shows comparison of the experimental peptide pose (in magenta, taken from the 3bfq complex) with CABS-dock models using contact information: the best from ten top-scored models (in green, RMSD10 = 2.89 Å) and the best from 10,000 models (in cyan, RMSD10k = 1.47 Å). Additionally, the best model from 10 top-scored models without contact information (default mode) is shown (in orange, RMSD10 = 10.02 Å). The receptor residue belonging to the side-chain contact used in the docking is marked in red

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