Fig. 3
From: Modeling EphB4-EphrinB2 protein–protein interaction using flexible docking of a short linear motif
Comparison of contact maps at different modeling stages and the experimental complex structure for EphB4-EphrinB2 interaction. The figures show maps of contacts formed between the SLiM fragment localized on EphrinB2 and the protein EphB4 receptor for: a CABS-dock prediction, b superimposition, c final refinement, and d a reference map for the experimental complex structure (PDB ID: 2HLE). The maps were calculated with COCOMAPS tool [45] with default settings (cut-off distance of 8 Å)