Table 7 Best candidate RGs for normal normal lung and lung adenocarcinoma according to Fig. 5c and ranked by CV
From: Automated identification of reference genes based on RNA-seq data
Transcript_id | CV (%) | Mean RPMM | Gene | Description |
|---|---|---|---|---|
ENST00000411857.2 | 16.34 | 224.7 | HNRNPA1P54 | Heterogeneous nuclear ribonucleoprotein A1 pseudogene 54 |
ENST00000270460.10 | 18.06 | 204.1 | EPN1 | Epsin 1 |
ENST00000373191.8 | 18.17 | 195.4 | AGO3 | Argonaute 3, RISC catalytic component |
ENST00000323443.6 | 18.2 | 218.4 | LRRC57 | Leucine rich repeat containing 57 |
ENST00000367975.6 | 18.35 | 204.8 | SDHC | Succinate dehydrogenase complex subunit C |
ENST00000528973.1 | 18.42 | 211 | PCSK7 | Proprotein convertase subtilisin/kexin type 7 |
ENST00000262160.10 | 18.7 | 214 | SMAD2 | SMAD family member 2 |
ENST00000607772.5 | 18.73 | 200.3 | CNKSR3 | CNKSR family member 3 |
ENST00000261854.9 | 18.85 | 198.2 | SPPL2A | Signal peptide peptidase like 2A |
ENST00000398004.3 | 19.12 | 316.1 | SLC35E3 | Solute carrier family 35 member E3 |
ENST00000396444.7 | 19.21 | 294 | USP8 | Ubiquitin specific peptidase 8 |
ENST00000304177.9 | 19.28 | 212.4 | C15orf40 | Chromosome 15 open reading frame 40 |
ENST00000328654.9 | 19.31 | 241.8 | ZNF26 | Zinc finger protein 26 |
ENST00000307635.3 | 19.34 | 218.1 | ZNF556 | Zinc finger protein 556 |
ENST00000258711.7 | 19.38 | 323.7 | CHST12 | Carbohydrate (chondroitin 4) sulfotransferase 12 |
ENST00000329627.11 | 19.41 | 318.1 | PEX26 | Peroxisomal biogenesis factor 26 |
ENST00000322122.7 | 19.49 | 192.7 | TRIM72 | Tripartite motif containing 72, E3 ubiquitin protein ligase |
ENST00000238831.8 | 19.5 | 291.1 | YIPF4 | Yip1 domain family member 4 |
ENST00000258149.9 | 19.71 | 222.8 | MDM2 | MDM2 proto-oncogene, E3 ubiquitin protein ligase |
ENST00000253115.6 | 19.72 | 227.3 | ZNF426 | Zinc finger protein 426 |
ENST00000614987.4 | 19.74 | 346.8 | RPS6KA5 | Ribosomal protein S6 kinase, 90Â kDa, polypeptide 5 |