Table 6 Best candidate RGs for normal lung and small-cell lung cancer according to Fig. 5b and ranked by CV
From: Automated identification of reference genes based on RNA-seq data
Transcript_id | CV (%) | Mean RPMM | Gene | Description |
|---|---|---|---|---|
ENST00000425566.1 | 12.68 | 76.2 | RPL23AP87 | Ribosomal protein L23a pseudogene 87 |
ENST00000338970.10 | 12.96 | 103.3 | RPL14 | Ribosomal protein L14 |
ENST00000442744.6 | 13.28 | 69.4 | UBA52 | Ubiquitin A-52 residue ribosomal protein fusion product 1 |
ENST00000456530.6 | 16.02 | 76.7 | RPL15 | Ribosomal protein L15 |
ENST00000553521.5 | 16.21 | 50.2 | SRSF5 | Serine/arginine-rich splicing factor 5 |
ENST00000373242.6 | 16.8 | 73 | SAR1A | Secretion associated, Ras related GTPase 1A |
ENST00000261890.6 | 16.88 | 55.3 | RAB11A | RAB11A, member RAS oncogene family |
ENST00000510199.5 | 17.11 | 66 | GNB2L1 | Guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 |
ENST00000234115.10 | 17.59 | 63.6 | PLEKHB2 | Pleckstrin homology domain containing B2 |
ENST00000401722.7 | 17.69 | 83.6 | SLC25A3 | Solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 |
ENST00000412331.6 | 17.76 | 54.6 | EIF3L | Eukaryotic translation initiation factor 3 subunit L |
ENST00000422514.6 | 18.83 | 80.3 | RPL23A | Ribosomal protein L23a |
ENST00000342374.4 | 19.13 | 45.2 | SERINC3 | Serine incorporator 3 |
ENST00000483316.1 | 19.26 | 77.6 | BAZ2B | Bromodomain adjacent to zinc finger domain 2B |
ENST00000335508.10 | 19.41 | 72.4 | SF3B1 | Splicing factor 3b subunit 1 |
ENST00000471227.3 | 19.62 | 66.4 | RPL23AP2 | Ribosomal protein L23a pseudogene 2 |
ENST00000334256.8 | 19.77 | 46.9 | KPNA4 | Karyopherin alpha 4 (importin alpha 3) |
ENST00000332361.5 | 19.79 | 64.5 | RPL23AP57 | Ribosomal protein L23a pseudogene 57 |
ENST00000416139.1 | 19.81 | 64.5 | RPL23AP18 | Ribosomal protein L23a pseudogene 18 |
ENST00000495596.5 | 19.84 | 71.5 | ATP5G2 | ATP synthase, HÂ +Â transporting, mitochondrial Fo complex subunit C2 (subunit 9) |
ENST00000446445.1 | 19.87 | 64.1 | RPL23AP43 | Ribosomal protein L23a pseudogene 43 |