From: Automated identification of reference genes based on RNA-seq data
Species/tissue | No. raw reads | Mean length (nt) | No. transcripts | Pre-processing | Mapping | FindRGs | Total |
---|---|---|---|---|---|---|---|
Olive tree pistil | 767,963 | 525 | 9157 | 24Â min 45Â s | 26Â s | 5Â s | 25Â min 16Â s |
8 nodes, 192 cpus | 3 nodes, 72 cpus | 1 node, 9 cpus | |||||
Arabidopsis | 23,821,198 (x2) | 100 (x2) | 35,386 | 43Â s | 19Â s | 0.2Â s | 1Â min 2Â s |
8 nodes, 192 cpus | 2 nodes, 48 cpus | 1 node, 9 cpus | |||||
Human prostate | 969,884,666 (x2) | 90 (x2) | 176,241 | 28Â s | 2Â min 37Â s | 0.03Â s | 3Â min 5Â s |
96 nodes, 2304 cpus | 24 nodes, 576 cpus | 1 node, 9 cpus |