From: Approximate parameter inference in systems biology using gradient matching: a comparative evaluation
Abbreviation | Definition | Details |
---|---|---|
10C | 10 chains | When comparing our methods, it was of interest to see how the performance depended on the number of parallel MCMC chains, as originally the authors used 4 chains |
Obs20 | 20 observations | Originally, the authors use 401 observations. We reduced this to a dataset size more usual with these types of experiments to observe the dependency of the methods on the amount of data |
15K | 15 knots | The method in C&S uses B-splines interpolation. We changed the original tuning parameters from the authors' paper to observe the sensitivity of the parameter estimation by these tuning parameters |
P3 | polynomial order 3 (cubic spline) | The original polynomial order is 5 and again, we wanted to observe the sensitivity of the parameter estimation by these tuning parameters |